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PUBLISHED PAPERS

List of NGS Services publications from Bencos

Published Papers

List of NGS Services publications from Bencos Research Solutions Private Limited from 2017-2023

The following list includes the publications of works of Next Generation Sequencing and Analysis of Bencos Research Solutions Private Limited.

2023

19 July 2023

Differential expression of miRNAs between Young-Onset and Late-Onset Indian colorectal carcinoma patients.

Moiz S, Mondal V, Bishnu D, Das B, Bose B, Das S, Banerjee N, Dutta A, Chatterjee K, Goswami S, Mukhopadhyay S, Basu S.

Read Paper

07 January 2023

Molecular Dissection of the Odoiporus longicollis Infested Musa paradisiaca Transcriptome Reveals Key Genes Involved in Defense.

Borah S, Bora D, Bhorali P.

Read Paper

2022

02 June 2022

Essential role of Rnd1 in innate immunity during viral and bacterial infections.

Kumar A, Mishra S, Kumar A, Raut AA, Sato S, Takaoka A, Kumar H.

Read Paper

14 November 2022

The mitochondrial gene-CMPK2 functions as a rheostat for macrophage homeostasis.

Arumugam P, Chauhan M, Rajeev T, Chakraborty R, Bisht K, Madan M, Shankaran D, Ramalingam S, Gandotra S, Rao V.

Read Paper

18 May, 2022

Temporal analysis of melanogenesis identifies fatty acid metabolism as key skin pigment regulator.

Sultan F, Basu R, Murthy D, Kochar M, Attri KS, Aggarwal A, Kumari P, Dnyane P, Tanwar J, Motiani RK, Singh A, Gadgil C, Bhavesh NS, Singh PK, Natarajan VT, Gokhale RS.

Read Paper

10 March, 2022

Exploring the bacterial Community in the sediments of an anthropically polluted urban creek located on the west coast of Mumbai, India.

Monga A, Fulke AB, Ram A, Dasgupta D.

Read Paper

16 July 2022

Infection by Pseudocercospora musae leads to an early reprogramming of the Musa paradisiaca defense transcriptome.

Borah S, Bora D, Bhorali P.

Read Paper

21 September, 2022

Characterization of Plasmodium falciparum RAP domain proteins-RAP291 and RAP070, and their association with ribosomal RNAs.

Akhtar A, Deshmukh A, Panda A, Saini E, Pandey R, Junaid IT, Onchieku N, Parveen S, Singh SS, Gupta D, Theisen M.

Read Paper

09 May 2022

Species-specific function of conserved regulators in orchestrating rice root architecture.

Garg T, Singh Z, Chennakesavulu K, Mushahary KK, Dwivedi AK, Varapparambathu V, Singh H, Singh RS, Sircar D, Chandran D, Prasad K.

Read Paper

2021

30 September, 2021

Adaptation and compensation in a bacterial gene regulatory network evolving under antibiotic selection.

Patel V, Matange N.

Read Paper

21 May, 2021

Redox homeostasis in Mycobacterium tuberculosis is modulated by a novel actinomycete-specific transcription factor.

Khan MZ, Singha B, Ali MF, Taunk K, Rapole S, Gourinath S, Nandicoori VK.

Read Paper

13 January 2021

Histone acetyltransferase PfGCN5 regulates stress responsive and artemisinin resistance related genes in Plasmodium falciparum.

Rawat M, Kanyal A, Sahasrabudhe A, Vembar SS, Lopez-Rubio JJ, Karmodiya K.

Read Paper

May 2021

A novel ORF1a-based SARS-CoV-2 RT-PCR assay to resolve inconclusive samples.

Jawade K, Sinha AY, Bhagat S, Bhowmick S, Chauhan B, Kaginkar S, Palav H, Kasarpalkar N, Devadiga P, Karandikar K, Agrawal S, Shastri J, Munne K, Bhor VM, Mahale SD, Bhowmik S, Jagtap D, Patel V.

Read Paper

1 March, 2021

Bile Acid Tethered Docetaxel‐Based Nanomicelles Mitigate Tumor Progression through Epigenetic Changes.

Sreekanth V, Kar A, Kumar S, Pal S, Yadav P, Sharma Y, Komalla V, Sharma H, Shyam R, Sharma RD, Mukhopadhyay A.

Read Paper

6 April, 2021

Temporal resolution of melanogenesis determine fatty acid metabolism as key skin pigment regulator.

Sultan F, Basu R, Murthy D, Kochar M, Attri KS, Aggrawal A, Kumari P, Dnyane P, Singh A, Gadgil C, Bhavesh NS.

Read Paper

2020

1 December, 2020

Two high-yield complementary methods to sort cell populations by their 2D or 3D migration speed.

Arora A, Niño JLG, Myaing MZ, Chia S, Arasi B, Ravasio A, Huang RY, Dasgupta R, Biro M, Viasnoff V.

Read Paper

04 November 2020

Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood.

Mishra S, Sevak JK, Das A, Arimbasseri GA, Bhatnagar S, Gopinath SD.

Read Paper

20 January 2020

Renal detection of Plasmodium falciparum, Plasmodium vivax and Plasmodium knowlesi in malaria associated acute kidney injury: a retrospective case-control study.

Kaur C, Pramanik A, Kumari K, Mandage R, Dinda AK, Sankar J, Bagga A, Agarwal SK, Sinha A, Singh G, Acharya P.

Read Paper

22 July, 2020

Host sirtuin 2 as an immunotherapeutic target against tuberculosis.

Bhaskar A, Kumar S, Khan MZ, Singh A, Dwivedi VP, Nandicoori VK.

Read Paper

12 March, 2020

MicroRNA-363-3p inhibits cell proliferation and induces apoptosis in retinoblastoma cells via the Akt/mTOR signaling pathway by targeting PIK3CA.

Ma X, Jin L, Lei X, Tong J, Wang R.

Read Paper

12 June, 2020

Genome-wide high resolution expression map and functions of key cell fate determinants reveal the dynamics of crown root development in rice.

Garg T, Singh Z, Dwivedi AK, Varapparambathu V, Singh RS, Yadav M, Chandran D, Prasad K, Jain M, Yadav SR.

Read Paper

11 December, 2020

NPRL3: direct effects on human phenotypic variability, mTOR signaling, subcellular mTOR localization, cortical lamination, and seizure susceptibility.

Iffland PH, Everett ME, Cobb-Pitstick KM, Bowser LE, Barnes AE, Babus JK, Romanowski A, Baybis M, Puffenberger EG, Gonzaga-Jauregui C, Poulopoulos A.

Read Paper

3 March, 2020

Integrated role of microRNA-30e-5p through targeting negative regulators of innate immune pathways during HBV infection and SLE.

Mishra R, Bhattacharya S, Rawat BS, Kumar A, Kumar A, Niraj K, Chande A, Gandhi P, Khetan D, Aggarwal A, Sato S.

Read Paper

20 January 2020

Role of PfGCN5 in nutrient sensing and transcriptional regulation in Plasmodium falciparum.

Rawat M, Malhotra R, Shintre S, Pani S, Karmodiya K.

Read Paper

2019

8 February 2019

Renal Localization of Plasmodium vivax and Zoonotic Monkey Parasite Plasmodium knowlesi Derived Components in Malaria Associated Acute Kidney Injury.

Acharya P, Pramanik A, Kaur C, Kumari K, Mandage R, Dinda AK, Sankar J, Bagga A, Agarwal SK, Sinha A, Singh G.

Read Paper

23 October 2019

A Localized Chimeric Hydrogel Therapy Combats Tumor Progression through Alteration of Sphingolipid Metabolism.

Pal S, Medatwal N, Kumar S, Kar A, Komalla V, Yavvari PS, Mishra D, Rizvi ZA, Nandan S, Malakar D, Pillai M, Awasthi A, Das P, Sharma RD, Srivastava A, Sengupta S, Dasgupta U, Bajaj A.

Read Paper

1 May 2019

HIV-1 Nef physically associate with CAMKIIδ–ASK-1 complex to inhibit p38MAPK signalling and apoptosis in infected cells.

Kumar P, Rawat K, Sharma T, Kumari S, Saxena R, Kumar B, Baghel T, Afshan T, Siddiqi MI, Nazir A, Ghosh JK.

Read Paper

2018

12 September 2018

MicroRNA hsa-miR-324-5p Suppresses H5N1 Virus Replication by Targeting the Viral PB1 and Host CUEDC2.

Kumar A, Kumar A, Ingle H, Kumar S, Mishra R, Verma MK, Biswas D, Kumar NS, Mishra A, Raut AA, Takaoka A, Kumar H.

Read Paper

12 September 2018

MicroRNA hsa-miR-324-5p Suppresses H5N1 Virus Replication by Targeting the Viral PB1 and Host CUEDC2.

Kumar A, Kumar A, Ingle H, Kumar S, Mishra R, Verma MK, Biswas D, Kumar NS, Mishra A, Raut AA, Takaoka A, Kumar H.

Read Paper

30 November 2018

Carbaryl as a Carbon and Nitrogen Source: an Inducible Methylamine Metabolic Pathway at the Biochemical and Molecular Levels in Pseudomonas sp. Strain C5pp.

Kamini, Sharma R, Punekar NS, Phale PS.

Read Paper

2017

31 March 2017

Carbon Source-Dependent Inducible Metabolism of Veratryl Alcohol and Ferulic Acid in Pseudomonas putida CSV86.

Mohan K, Phale PS.

Read Paper

12 October 2017

Genetic and Epigenetic Profiling Reveals EZH2-mediated Down Regulation of OCT-4 Involves NR2F2 during Cardiac Differentiation of Human Embryonic Stem Cells.

Pursani V, Pethe P, Bashir M, Sampath P, Tanavde V, Bhartiya D.

Read Paper

2023

19 July 2023

Differential expression of miRNAs between Young-Onset and Late-Onset Indian colorectal carcinoma patients.

Moiz S, Mondal V, Bishnu D, Das B, Bose B, Das S, Banerjee N, Dutta A, Chatterjee K, Goswami S, Mukhopadhyay S, Basu S.

Read Paper

07 January 2023

Molecular Dissection of the Odoiporus longicollis Infested Musa paradisiaca Transcriptome Reveals Key Genes Involved in Defense.

Borah S, Bora D, Bhorali P.

Read Paper

2022

02 June 2022

Essential role of Rnd1 in innate immunity during viral and bacterial infections.

Kumar A, Mishra S, Kumar A, Raut AA, Sato S, Takaoka A, Kumar H.

Read Paper

14 November 2022

The mitochondrial gene-CMPK2 functions as a rheostat for macrophage homeostasis.

Arumugam P, Chauhan M, Rajeev T, Chakraborty R, Bisht K, Madan M, Shankaran D, Ramalingam S, Gandotra S, Rao V.

Read Paper

18 May, 2022

Temporal analysis of melanogenesis identifies fatty acid metabolism as key skin pigment regulator.

Sultan F, Basu R, Murthy D, Kochar M, Attri KS, Aggarwal A, Kumari P, Dnyane P, Tanwar J, Motiani RK, Singh A, Gadgil C, Bhavesh NS, Singh PK, Natarajan VT, Gokhale RS.

Read Paper

10 March, 2022

Exploring the bacterial Community in the sediments of an anthropically polluted urban creek located on the west coast of Mumbai, India.

Monga A, Fulke AB, Ram A, Dasgupta D.

Read Paper

16 July 2022

Infection by Pseudocercospora musae leads to an early reprogramming of the Musa paradisiaca defense transcriptome.

Borah S, Bora D, Bhorali P.

Read Paper

21 September, 2022

Characterization of Plasmodium falciparum RAP domain proteins-RAP291 and RAP070, and their association with ribosomal RNAs.

Akhtar A, Deshmukh A, Panda A, Saini E, Pandey R, Junaid IT, Onchieku N, Parveen S, Singh SS, Gupta D, Theisen M.

Read Paper

09 May 2022

Species-specific function of conserved regulators in orchestrating rice root architecture.

Garg T, Singh Z, Chennakesavulu K, Mushahary KK, Dwivedi AK, Varapparambathu V, Singh H, Singh RS, Sircar D, Chandran D, Prasad K.

Read Paper

2021

30 September, 2021

Adaptation and compensation in a bacterial gene regulatory network evolving under antibiotic selection.

Patel V, Matange N.

Read Paper

21 May, 2021

Redox homeostasis in Mycobacterium tuberculosis is modulated by a novel actinomycete-specific transcription factor.

Khan MZ, Singha B, Ali MF, Taunk K, Rapole S, Gourinath S, Nandicoori VK.

Read Paper

13 January 2021

Histone acetyltransferase PfGCN5 regulates stress responsive and artemisinin resistance related genes in Plasmodium falciparum.

Rawat M, Kanyal A, Sahasrabudhe A, Vembar SS, Lopez-Rubio JJ, Karmodiya K.

Read Paper

May 2021

A novel ORF1a-based SARS-CoV-2 RT-PCR assay to resolve inconclusive samples.

Jawade K, Sinha AY, Bhagat S, Bhowmick S, Chauhan B, Kaginkar S, Palav H, Kasarpalkar N, Devadiga P, Karandikar K, Agrawal S, Shastri J, Munne K, Bhor VM, Mahale SD, Bhowmik S, Jagtap D, Patel V.

Read Paper

1 March, 2021

Bile Acid Tethered Docetaxel‐Based Nanomicelles Mitigate Tumor Progression through Epigenetic Changes.

Sreekanth V, Kar A, Kumar S, Pal S, Yadav P, Sharma Y, Komalla V, Sharma H, Shyam R, Sharma RD, Mukhopadhyay A.

Read Paper

6 April, 2021

Temporal resolution of melanogenesis determine fatty acid metabolism as key skin pigment regulator.

Sultan F, Basu R, Murthy D, Kochar M, Attri KS, Aggrawal A, Kumari P, Dnyane P, Singh A, Gadgil C, Bhavesh NS.

Read Paper

2020

1 December, 2020

Two high-yield complementary methods to sort cell populations by their 2D or 3D migration speed.

Arora A, Niño JLG, Myaing MZ, Chia S, Arasi B, Ravasio A, Huang RY, Dasgupta R, Biro M, Viasnoff V.

Read Paper

04 November 2020

Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood.

Mishra S, Sevak JK, Das A, Arimbasseri GA, Bhatnagar S, Gopinath SD.

Read Paper

20 January 2020

Renal detection of Plasmodium falciparum, Plasmodium vivax and Plasmodium knowlesi in malaria associated acute kidney injury: a retrospective case-control study.

Kaur C, Pramanik A, Kumari K, Mandage R, Dinda AK, Sankar J, Bagga A, Agarwal SK, Sinha A, Singh G, Acharya P.

Read Paper

22 July, 2020

Host sirtuin 2 as an immunotherapeutic target against tuberculosis.

Bhaskar A, Kumar S, Khan MZ, Singh A, Dwivedi VP, Nandicoori VK.

Read Paper

12 March, 2020

MicroRNA-363-3p inhibits cell proliferation and induces apoptosis in retinoblastoma cells via the Akt/mTOR signaling pathway by targeting PIK3CA.

Ma X, Jin L, Lei X, Tong J, Wang R.

Read Paper

12 June, 2020

Genome-wide high resolution expression map and functions of key cell fate determinants reveal the dynamics of crown root development in rice.

Garg T, Singh Z, Dwivedi AK, Varapparambathu V, Singh RS, Yadav M, Chandran D, Prasad K, Jain M, Yadav SR.

Read Paper

11 December, 2020

NPRL3: direct effects on human phenotypic variability, mTOR signaling, subcellular mTOR localization, cortical lamination, and seizure susceptibility.

Iffland PH, Everett ME, Cobb-Pitstick KM, Bowser LE, Barnes AE, Babus JK, Romanowski A, Baybis M, Puffenberger EG, Gonzaga-Jauregui C, Poulopoulos A.

Read Paper

3 March, 2020

Integrated role of microRNA-30e-5p through targeting negative regulators of innate immune pathways during HBV infection and SLE.

Mishra R, Bhattacharya S, Rawat BS, Kumar A, Kumar A, Niraj K, Chande A, Gandhi P, Khetan D, Aggarwal A, Sato S.

Read Paper

20 January 2020

Role of PfGCN5 in nutrient sensing and transcriptional regulation in Plasmodium falciparum.

Rawat M, Malhotra R, Shintre S, Pani S, Karmodiya K.

Read Paper

2019

8 February 2019

Renal Localization of Plasmodium vivax and Zoonotic Monkey Parasite Plasmodium knowlesi Derived Components in Malaria Associated Acute Kidney Injury.

Acharya P, Pramanik A, Kaur C, Kumari K, Mandage R, Dinda AK, Sankar J, Bagga A, Agarwal SK, Sinha A, Singh G.

Read Paper

23 October 2019

A Localized Chimeric Hydrogel Therapy Combats Tumor Progression through Alteration of Sphingolipid Metabolism.

Pal S, Medatwal N, Kumar S, Kar A, Komalla V, Yavvari PS, Mishra D, Rizvi ZA, Nandan S, Malakar D, Pillai M, Awasthi A, Das P, Sharma RD, Srivastava A, Sengupta S, Dasgupta U, Bajaj A.

Read Paper

1 May 2019

HIV-1 Nef physically associate with CAMKIIδ–ASK-1 complex to inhibit p38MAPK signalling and apoptosis in infected cells.

Kumar P, Rawat K, Sharma T, Kumari S, Saxena R, Kumar B, Baghel T, Afshan T, Siddiqi MI, Nazir A, Ghosh JK.

Read Paper

2018

12 September 2018

MicroRNA hsa-miR-324-5p Suppresses H5N1 Virus Replication by Targeting the Viral PB1 and Host CUEDC2.

Kumar A, Kumar A, Ingle H, Kumar S, Mishra R, Verma MK, Biswas D, Kumar NS, Mishra A, Raut AA, Takaoka A, Kumar H.

Read Paper

12 September 2018

MicroRNA hsa-miR-324-5p Suppresses H5N1 Virus Replication by Targeting the Viral PB1 and Host CUEDC2.

Kumar A, Kumar A, Ingle H, Kumar S, Mishra R, Verma MK, Biswas D, Kumar NS, Mishra A, Raut AA, Takaoka A, Kumar H.

Read Paper

30 November 2018

Carbaryl as a Carbon and Nitrogen Source: an Inducible Methylamine Metabolic Pathway at the Biochemical and Molecular Levels in Pseudomonas sp. Strain C5pp.

Kamini, Sharma R, Punekar NS, Phale PS.

Read Paper